org.openscience.cdk.debug
Class DebugPDBStructure

java.lang.Object
  extended by org.openscience.cdk.ChemObject
      extended by org.openscience.cdk.protein.data.PDBStructure
          extended by org.openscience.cdk.debug.DebugPDBStructure
All Implemented Interfaces:
Serializable, Cloneable, ICDKObject, IChemObject, IPDBStructure

public class DebugPDBStructure
extends PDBStructure

Debugging data class.

Author:
Miguel Rojas
See Also:
Serialized Form
Belongs to CDK module:
datadebug
Source code:
HEAD

Field Summary
 
Fields inherited from class org.openscience.cdk.protein.data.PDBStructure
HELIX, SHEET, TURN
 
Constructor Summary
DebugPDBStructure()
           
 
Method Summary
 Character getEndChainID()
          get the ending Chain identifier of this structure.
 Character getEndInsertionCode()
          get the ending Code for insertion of residues of this structure.
 Integer getEndSequenceNumber()
          get the ending sequence number of this structure.
 Character getStartChainID()
          get start Chain identifier of this structure.
 Character getStartInsertionCode()
          get start Code for insertion of residues of this structure.
 Integer getStartSequenceNumber()
          get the start sequence number of this structure.
 String getStructureType()
          get Structure Type of this structure.
 void setEndChainID(Character endChainID)
          set the ending Chain identifier of this structure.
 void setEndInsertionCode(Character endInsertionCode)
          set the ending Code for insertion of residues of this structure.
 void setEndSequenceNumber(Integer endSequenceNumber)
          set the ending sequence number of this structure.
 void setStartChainID(Character startChainID)
          set the start Chain identifier of this structure.
 void setStartInsertionCode(Character startInsertionCode)
          set the start Chain identifier of this structure.
 void setStartSequenceNumber(Integer startSequenceNumber)
          set the start sequence number of this structure.
 void setStructureType(String structureType)
          set the Structure Type of this structure.
 
Methods inherited from class org.openscience.cdk.ChemObject
addListener, clone, compare, getBuilder, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject
getBuilder
 
Methods inherited from interface org.openscience.cdk.interfaces.IChemObject
toString
 

Constructor Detail

DebugPDBStructure

public DebugPDBStructure()
Method Detail

getEndChainID

public Character getEndChainID()
Description copied from class: PDBStructure
get the ending Chain identifier of this structure.

Specified by:
getEndChainID in interface IPDBStructure
Overrides:
getEndChainID in class PDBStructure
Returns:
the ending Chain identifier of this structure

setEndChainID

public void setEndChainID(Character endChainID)
Description copied from class: PDBStructure
set the ending Chain identifier of this structure.

Specified by:
setEndChainID in interface IPDBStructure
Overrides:
setEndChainID in class PDBStructure
Parameters:
endChainID - the ending Chain identifier of this structure

getEndInsertionCode

public Character getEndInsertionCode()
Description copied from class: PDBStructure
get the ending Code for insertion of residues of this structure.

Specified by:
getEndInsertionCode in interface IPDBStructure
Overrides:
getEndInsertionCode in class PDBStructure
Returns:
the ending Code for insertion of residues of this structure

setEndInsertionCode

public void setEndInsertionCode(Character endInsertionCode)
Description copied from class: PDBStructure
set the ending Code for insertion of residues of this structure.

Specified by:
setEndInsertionCode in interface IPDBStructure
Overrides:
setEndInsertionCode in class PDBStructure
Parameters:
endInsertionCode - the ending Code for insertion of residues of this structure

getEndSequenceNumber

public Integer getEndSequenceNumber()
Description copied from class: PDBStructure
get the ending sequence number of this structure.

Specified by:
getEndSequenceNumber in interface IPDBStructure
Overrides:
getEndSequenceNumber in class PDBStructure
Returns:
the ending sequence number of this structure

setEndSequenceNumber

public void setEndSequenceNumber(Integer endSequenceNumber)
Description copied from class: PDBStructure
set the ending sequence number of this structure.

Specified by:
setEndSequenceNumber in interface IPDBStructure
Overrides:
setEndSequenceNumber in class PDBStructure
Parameters:
endSequenceNumber - the ending sequence number of this structure

getStartChainID

public Character getStartChainID()
Description copied from class: PDBStructure
get start Chain identifier of this structure.

Specified by:
getStartChainID in interface IPDBStructure
Overrides:
getStartChainID in class PDBStructure
Returns:
the start Chain identifier of this structure

setStartChainID

public void setStartChainID(Character startChainID)
Description copied from class: PDBStructure
set the start Chain identifier of this structure.

Specified by:
setStartChainID in interface IPDBStructure
Overrides:
setStartChainID in class PDBStructure
Parameters:
startChainID - the start Chain identifier of this structure

getStartInsertionCode

public Character getStartInsertionCode()
Description copied from class: PDBStructure
get start Code for insertion of residues of this structure.

Specified by:
getStartInsertionCode in interface IPDBStructure
Overrides:
getStartInsertionCode in class PDBStructure
Returns:
the start Code for insertion of residues of this structure

setStartInsertionCode

public void setStartInsertionCode(Character startInsertionCode)
Description copied from class: PDBStructure
set the start Chain identifier of this structure.

Specified by:
setStartInsertionCode in interface IPDBStructure
Overrides:
setStartInsertionCode in class PDBStructure
Parameters:
startInsertionCode - the start Chain identifier of this structure

getStartSequenceNumber

public Integer getStartSequenceNumber()
Description copied from class: PDBStructure
get the start sequence number of this structure.

Specified by:
getStartSequenceNumber in interface IPDBStructure
Overrides:
getStartSequenceNumber in class PDBStructure
Returns:
the start sequence number of this structure

setStartSequenceNumber

public void setStartSequenceNumber(Integer startSequenceNumber)
Description copied from class: PDBStructure
set the start sequence number of this structure.

Specified by:
setStartSequenceNumber in interface IPDBStructure
Overrides:
setStartSequenceNumber in class PDBStructure
Parameters:
startSequenceNumber - the start sequence number of this structure

getStructureType

public String getStructureType()
Description copied from class: PDBStructure
get Structure Type of this structure.

Specified by:
getStructureType in interface IPDBStructure
Overrides:
getStructureType in class PDBStructure
Returns:
the Structure Type of this structure

setStructureType

public void setStructureType(String structureType)
Description copied from class: PDBStructure
set the Structure Type of this structure.

Specified by:
setStructureType in interface IPDBStructure
Overrides:
setStructureType in class PDBStructure
Parameters:
structureType - the Structure Type of this structure