Deprecated API

Contents

• Deprecated Classes
• Deprecated Methods

Deprecated Classes

org.openscience.cdk.ringsearch.FiguerasSSSRFinder
Use SSSRFinder instead (exact algorithm).

Deprecated Methods

org.openscience.cdk.AtomContainer.getBondOrderSum(IAtom)
Replaced by AtomContainerManipulator#getBondOrderSum(IAtomContainer, IAtom)

org.openscience.cdk.isomorphism.matchers.QueryAtomContainer.getBondOrderSum(IAtom)
Replaced by AtomContainerManipulator#getBondOrderSum(IAtomContainer, IAtom)

org.openscience.cdk.silent.AtomContainer.getBondOrderSum(IAtom)
Replaced by AtomContainerManipulator#getBondOrderSum(IAtomContainer, IAtom)

org.openscience.cdk.iupac.parser.SimpleCharStream.getColumn()

org.openscience.cdk.smiles.smarts.parser.SimpleCharStream.getColumn()

org.openscience.cdk.iupac.parser.SimpleCharStream.getLine()

org.openscience.cdk.smiles.smarts.parser.SimpleCharStream.getLine()

org.openscience.cdk.formula.AdductFormula.setCharge(Integer)

org.openscience.cdk.silent.AdductFormula.setCharge(Integer)

org.openscience.cdk.io.rdf.CDKOWLReader.setReader(Reader)