org.openscience.cdk.io.iterator
Class IteratingPCCompoundASNReader

java.lang.Object
  org.openscience.cdk.io.ChemObjectIO
      org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader<IAtomContainer>
          org.openscience.cdk.io.iterator.IteratingPCCompoundASNReader

All Implemented Interfaces:

Closeable, Iterator<IAtomContainer>, IChemObjectIO, IChemObjectReader, IIteratingChemObjectReader<IAtomContainer>

public class IteratingPCCompoundASNReader
extends DefaultIteratingChemObjectReader<IAtomContainer>

Iterating PubChem PCCompound ASN reader.

Author:

Egon Willighagen

See Also:

PCCompoundASNReader

Keywords:

file format, ASN, PubChem

Created on:

2008-05-05

Belongs to CDK module:

io

Source code:

cdk-1.4.x

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

IChemObjectReader.Mode

Constructor Summary

IteratingPCCompoundASNReader(InputStream in, IChemObjectBuilder builder)
Constructs a new IteratingPCCompoundASNReader that can read Molecule from a given InputStream and IChemObjectBuilder.

IteratingPCCompoundASNReader(Reader in, IChemObjectBuilder builder)
Constructs a new IteratingPCCompoundASNReader that can read Molecule from a given Reader.

Method Summary

void	close() Closes this IChemObjectIO's resources.
IResourceFormat	getFormat() Returns the IResourceFormat class for this IO class.
boolean	hasNext()
IAtomContainer	next()
void	remove() File IO generally does not support removing of entries.
void	setReader(InputStream reader) Sets the InputStream from which this ChemObjectReader should read the contents.
void	setReader(Reader reader) Sets the Reader from which this ChemObjectReader should read the contents.

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Constructor Detail

IteratingPCCompoundASNReader

public IteratingPCCompoundASNReader(Reader in,
                                    IChemObjectBuilder builder)

Constructs a new IteratingPCCompoundASNReader that can read Molecule from a given Reader.

Parameters:

in - The Reader to read from

IteratingPCCompoundASNReader

public IteratingPCCompoundASNReader(InputStream in,
                                    IChemObjectBuilder builder)

Constructs a new IteratingPCCompoundASNReader that can read Molecule from a given InputStream and IChemObjectBuilder.

Parameters:

in - The input stream

builder - The builder

Method Detail

getFormat

@TestMethod(value="testGetFormat")
public IResourceFormat getFormat()

Description copied from interface: IChemObjectIO

Returns the IResourceFormat class for this IO class.

hasNext

public boolean hasNext()

next

public IAtomContainer next()

close

@TestMethod(value="testClose")
public void close()
           throws IOException

Description copied from interface: IChemObjectIO

Closes this IChemObjectIO's resources.

Throws:

IOException

remove

public void remove()

Description copied from class: DefaultIteratingChemObjectReader

File IO generally does not support removing of entries.

Specified by:

remove in interface Iterator<IAtomContainer>

Overrides:

remove in class DefaultIteratingChemObjectReader<IAtomContainer>

setReader

@TestMethod(value="testSetReader_Reader")
public void setReader(Reader reader)

Description copied from interface: IChemObjectReader

Sets the Reader from which this ChemObjectReader should read the contents.

setReader

@TestMethod(value="testSetReader_InputStream")
public void setReader(InputStream reader)

Description copied from interface: IChemObjectReader

Sets the InputStream from which this ChemObjectReader should read the contents.