org.openscience.cdk.pharmacophore
Class PharmacophoreAngleBond

java.lang.Object
  org.openscience.cdk.ChemObject
      org.openscience.cdk.ElectronContainer
          org.openscience.cdk.Bond
              org.openscience.cdk.pharmacophore.PharmacophoreAngleBond

All Implemented Interfaces:

Serializable, Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer

@TestClass(value="org.openscience.cdk.pharmacophore.PharmacophoreAngleBondTest")
public class PharmacophoreAngleBond
extends Bond

Represents an angle relationship between three pharmacophore groups.

Author:

Rajarshi Guha

See Also:

PharmacophoreAtom, Serialized Form

Keywords:

pharmacophore, 3D isomorphism

Belongs to CDK module:

pcore

Source code:

cdk-1.4.x

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Order, IBond.Stereo

Constructor Summary

PharmacophoreAngleBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2, PharmacophoreAtom patom3)
Create a pharmacophore distance constraint.

Method Summary

double

getBondLength() Get the angle between the three pharmacophore groups that make up the constraint.

Methods inherited from class org.openscience.cdk.Bond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isConnectedTo, setAtom, setAtoms, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.ElectronContainer

getElectronCount, setElectronCount

Methods inherited from class org.openscience.cdk.ChemObject

addListener, getBuilder, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Constructor Detail

PharmacophoreAngleBond

public PharmacophoreAngleBond(PharmacophoreAtom patom1,
                              PharmacophoreAtom patom2,
                              PharmacophoreAtom patom3)

Create a pharmacophore distance constraint.

Parameters:

patom1 - The first pharmacophore group

patom2 - The second pharmacophore group

patom3 - The third pharmacophore group

Method Detail

getBondLength

@TestMethod(value="testGetAngle1,testGetAngle2,testGetAngle3,testGetAngle4,testGetAngle5")
public double getBondLength()

Get the angle between the three pharmacophore groups that make up the constraint.

Returns:

The angle in degrees between the two groups