PMD 4.2.5 Report [module - charges]
2009-11-18 - 21:35:21


Summary

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org.openscience.cdk.charges.AtomTypeCharges 48 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.AtomTypeCharges 49 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.AtomTypeCharges 73 A method/constructor shouldn't explicitly throw java.lang.Exception
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org.openscience.cdk.charges.AtomTypeCharges 84-85 Avoid empty if statements
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org.openscience.cdk.charges.AtomTypeCharges 99 Avoid variables with short names like ac
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org.openscience.cdk.charges.Electronegativity 79 Avoid variables with short names like ac
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org.openscience.cdk.charges.Electronegativity 95 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 54-365 The class 'GasteigerMarsiliPartialCharges' has a Cyclomatic Complexity of 5 (Highest = 35).
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 56 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 56 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 56 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 57 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 57 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 57 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 58 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 58 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 58 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 59 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 59 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 59 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 146 A method/constructor shouldn't explicitly throw java.lang.Exception
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 146 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 146-217 The method 'assignGasteigerMarsiliSigmaPartialCharges' has a Cyclomatic Complexity of 12.
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 146-217 The method assignGasteigerMarsiliSigmaPartialCharges() has an NPath complexity of 248
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 156 Avoid variables with short names like q
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 260-364 Avoid really long methods.
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 260 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 260-364 The method 'assignGasteigerSigmaMarsiliFactors' has a Cyclomatic Complexity of 35.
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org.openscience.cdk.charges.GasteigerMarsiliPartialCharges 260-364 The method assignGasteigerSigmaMarsiliFactors() has an NCSS line count of 100
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 77-878 The class 'GasteigerPEPEPartialCharges' has a Cyclomatic Complexity of 8 (Highest = 49).
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 79 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 79 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 79 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 81 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 81 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 81 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 82 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 82 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 82 Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix).
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 85 The field name indicates a constant but its modifiers do not
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 85 Variables should start with a lowercase character
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 89 Avoid variables with short names like fE
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 91 Avoid variables with short names like fS
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 149 A method/constructor shouldn't explicitly throw java.lang.Exception
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 149-407 Avoid really long methods.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 149 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 149-407 The method 'assignGasteigerPiPartialCharges' has a Cyclomatic Complexity of 49.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 149-407 The method assignGasteigerPiPartialCharges() has an NCSS line count of 179
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 221 Avoid variables with short names like a
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 231 Avoid variables with short names like aa
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 233 Avoid variables with short names like ab
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 274-278 These nested if statements could be combined
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 282 An empty statement (semicolon) not part of a loop
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 290 Avoid variables with short names like Wt
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 327 Avoid variables with short names like q1
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 337 Avoid variables with short names like DX
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 343 Avoid variables with short names like Dq
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 351 Avoid variables with short names like WE
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 356 Avoid variables with short names like W
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 427 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 443 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 443 Avoid variables with short names like b
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 466 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 466 Avoid variables with short names like b
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 487 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 487-556 The method 'getHyperconjugationInteractions' has a Cyclomatic Complexity of 18.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 501 Avoid variables with short names like a0
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 502 Avoid variables with short names like a1
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 504-510 These nested if statements could be combined
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 508-509 These nested if statements could be combined
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 565 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 565 Avoid variables with short names like ds
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 603 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 603-651 The method 'getTopologicalFactors' has a Cyclomatic Complexity of 14.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 603-651 The method getTopologicalFactors() has an NPath complexity of 600
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 608 Avoid variables with short names like fQ
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 620 Avoid variables with short names like fB
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 640 Avoid variables with short names like fA
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 643-644 These nested if statements could be combined
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 678-763 The method 'assignPiFactors' has a Cyclomatic Complexity of 18.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 684 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 770-866 The method 'assignrPiMarsilliFactors' has a Cyclomatic Complexity of 20.
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 776 Avoid variables with short names like ac
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org.openscience.cdk.charges.GasteigerPEPEPartialCharges 872 Avoid variables with short names like ac
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org.openscience.cdk.charges.InductivePartialCharges 58-409 The class 'InductivePartialCharges' has a Cyclomatic Complexity of 7 (Highest = 17).
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org.openscience.cdk.charges.InductivePartialCharges 94 A method/constructor shouldn't explicitly throw java.lang.Exception
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org.openscience.cdk.charges.InductivePartialCharges 94 Avoid variables with short names like ac
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org.openscience.cdk.charges.InductivePartialCharges 151 Avoid variables with short names like ac
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org.openscience.cdk.charges.InductivePartialCharges 151-206 The method 'getPaulingElectronegativities' has a Cyclomatic Complexity of 17.
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org.openscience.cdk.charges.InductivePartialCharges 222 Avoid variables with short names like ac
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org.openscience.cdk.charges.InductivePartialCharges 246 The String literal "Problems with AtomTypeFactory due to " appears 4 times in this file; the first occurrence is on line 246
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org.openscience.cdk.charges.InductivePartialCharges 292 Avoid variables with short names like ac
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org.openscience.cdk.charges.InductivePartialCharges 292 Avoid variables with short names like as
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org.openscience.cdk.charges.InductivePartialCharges 353-391 The method 'getCovalentRadius' has a Cyclomatic Complexity of 15.
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org.openscience.cdk.charges.PiElectronegativity 84 Avoid variables with short names like ac
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org.openscience.cdk.charges.PiElectronegativity 100 Avoid variables with short names like ac
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org.openscience.cdk.charges.PiElectronegativity 127 Avoid variables with short names like q
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org.openscience.cdk.charges.Polarizability 57-325 The class 'Polarizability' has a Cyclomatic Complexity of 6 (Highest = 33).
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org.openscience.cdk.charges.Polarizability 233-303 The method 'getKJPolarizabilityFactor' has a Cyclomatic Complexity of 33.
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org.openscience.cdk.charges.StabilizationCharges 27 Avoid unused imports such as 'org.openscience.cdk.exception.CDKException'

Generated by PMD 4.2.5 on 2009-11-18 - 21:35:21.