PMD 4.2.5 Report [module - datadebug]
2009-11-18 - 21:33:11

Summary

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Prio File Line Description
3
 org.openscience.cdk.debug.DebugAdductFormula 37-135 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugAminoAcid 21-584 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugAminoAcid 50-584 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugAminoAcid 158 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 158
3
 org.openscience.cdk.debug.DebugAminoAcid 303 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 308 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 363 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 373 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 429 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 434 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAminoAcid 524-533 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugAtom 21-384 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugAtom 99 The String literal ", y=" appears 6 times in this file; the first occurrence is on line 99
3
 org.openscience.cdk.debug.DebugAtom 105 The String literal ", z=" appears 4 times in this file; the first occurrence is on line 105
3
 org.openscience.cdk.debug.DebugAtom 369-378 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugAtomContainer 21-550 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugAtomContainer 49-550 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugAtomContainer 169 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 169
3
 org.openscience.cdk.debug.DebugAtomContainer 178 Avoid variables with short names like lp
3
 org.openscience.cdk.debug.DebugAtomContainer 183 Avoid variables with short names like se
3
 org.openscience.cdk.debug.DebugAtomContainer 314 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 319 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 374 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 384 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 440 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 445 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugAtomContainer 535-544 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugAtomContainerSet 42-224 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugAtomContainerSet 129-138 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugAtomType 167-176 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugBioPolymer 21-612 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugBioPolymer 53-612 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugBioPolymer 161 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 161
3
 org.openscience.cdk.debug.DebugBioPolymer 306 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 311 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 366 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 376 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 432 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 437 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugBioPolymer 527-536 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugBond 167-176 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugChemFile 133-142 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugChemModel 132-141 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugChemObject 138-147 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugChemObject 158-160 Overriding method merely calls super
3
 org.openscience.cdk.debug.DebugChemObjectBuilder 21-405 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugChemObjectBuilder 75-403 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugChemSequence 129-138 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugCrystal 21-604 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugCrystal 52-604 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugCrystal 168 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 168
3
 org.openscience.cdk.debug.DebugCrystal 313 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 318 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 373 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 383 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 439 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 444 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugCrystal 534-543 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugElectronContainer 138-147 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugElement 168-177 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugFragmentAtom 25-399 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugFragmentAtom 105 The String literal ", y=" appears 6 times in this file; the first occurrence is on line 105
3
 org.openscience.cdk.debug.DebugFragmentAtom 111 The String literal ", z=" appears 4 times in this file; the first occurrence is on line 111
3
 org.openscience.cdk.debug.DebugFragmentAtom 375-384 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugIsotope 51 The String literal "Instantiated a DebugIsotope." appears 4 times in this file; the first occurrence is on line 51
3
 org.openscience.cdk.debug.DebugIsotope 176-185 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugLonePair 164-173 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugMapping 133-142 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugMolecule 21-551 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugMolecule 50-551 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugMolecule 170 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 170
3
 org.openscience.cdk.debug.DebugMolecule 315 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 320 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 375 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 385 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 441 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 446 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMolecule 536-545 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugMoleculeSet 44-256 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugMoleculeSet 131-140 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugMonomer 21-564 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugMonomer 50-564 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugMonomer 158 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 158
3
 org.openscience.cdk.debug.DebugMonomer 303 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 308 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 363 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 373 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 429 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 434 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugMonomer 524-533 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugPolymer 21-571 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugPolymer 52-571 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugPolymer 160 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 160
3
 org.openscience.cdk.debug.DebugPolymer 305 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 310 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 365 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 375 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 431 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 436 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugPolymer 526-535 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugPseudoAtom 21-396 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugPseudoAtom 101 The String literal ", y=" appears 6 times in this file; the first occurrence is on line 101
3
 org.openscience.cdk.debug.DebugPseudoAtom 107 The String literal ", z=" appears 4 times in this file; the first occurrence is on line 107
3
 org.openscience.cdk.debug.DebugPseudoAtom 371-380 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugReaction 43-259 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugReaction 134-143 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugReactionScheme 127-136 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugReactionSet 129-138 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugRing 21-584 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugRing 51-584 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugRing 183 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 183
3
 org.openscience.cdk.debug.DebugRing 328 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 333 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 388 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 398 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 454 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 459 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugRing 549-558 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugSingleElectron 147-156 clone() method should be implemented only if implementing Cloneable interface
3
 org.openscience.cdk.debug.DebugStrand 21-596 This class has a bunch of public methods and attributes
3
 org.openscience.cdk.debug.DebugStrand 52-596 This class has too many methods, consider refactoring it.
3
 org.openscience.cdk.debug.DebugStrand 160 The String literal " atom2=" appears 5 times in this file; the first occurrence is on line 160
3
 org.openscience.cdk.debug.DebugStrand 305 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 310 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 365 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 375 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 431 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 436 Avoid variables with short names like ec
3
 org.openscience.cdk.debug.DebugStrand 526-535 clone() method should be implemented only if implementing Cloneable interface

Generated by PMD 4.2.5 on 2009-11-18 - 21:33:11.